NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11386367

Scaffold Ga0211729_11386367


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11386367 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3891
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F040587Metagenome161Y
F043359Metagenome / Metatranscriptome156Y
F089832Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_113863671F000325GGAGMKVANGNDKLGKGCLVVSRPVGDTCPSDCDYLGNGCYAEGSEKIYPGVRPAAMQNLITEKGRIRAMILDAIRQGKSIRWHERGDWFLNGELDLDYVANVTWACESILLQGIKLPDMWFYTHIYDNRLVSFEKYMAVYASIHDANDKAEAVAAGFKLFAWCDSDEKVAAKRPRNKAKADVWRKSLPKLVVIDDTKYVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPSH
Ga0211729_113863673F089832AGGAGMPKYYIKCGTLELIRSIEFGPIEAAIQALGDTNSNDILDEHFYIDERGMYDYATAKPDTTVISLKKVAKLAGWTLGKDEE
Ga0211729_113863675F040587AGGAGGMIQWLGVIFTLLGLVYTGVKDYQKGDIKIPTIKQHLTPIKYPVQYCLMAYDPNLDKVFYLHENGQWHDYAPQQRRYSTTTQYHQDQNQKALGDVNGS
Ga0211729_113863679F043359GGAGMEWNNSHKNPPESGQKVYYFGPNIGLWIGHYSYEDGRSFNPYYYNDDGEIVYEDKKVELCPHIFTNTRFGFCDAYDAPFWLPYDEERAKSWCPIIPEEYTKDLYE
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