Scaffold Ga0211729_11256035

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11256035
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16688
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000220	Metagenome / Metatranscriptome	1544	Y
F008879	Metagenome / Metatranscriptome	326	Y
F053243	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1125603514	F053243	AGGAG	MDTKTVKKIADKEVTAHEKRMHPGAKKMRAGGKTNSDMLKYGRNMAKVMNQRSPGRGG
Ga0211729_112560353	F000220	N/A	MPNEKPNPDDTLSKVLAYVDSPFKLIAILVMGVVAFSGYFLWQNQELLVGAYRENQRMPSIAEDRIEDAASHLFKHTGAVVVAVFKVNPMFGTRVLHRAYTKEGRDKINDGLDVGLFTSNAANNRDVVALMAGEITCGSYTQAQSEIGLWYIEKGMTFGCRVGVPPDPSRFIGQITVGWAEQPEDMEKIHNLLLIAATMLSRSKQ
Ga0211729_112560359	F008879	AGG	MATTFKKGDVVKAVAVVPQGPVLALRMSEEGVVSYLIEWVDTDGATQQRWFEESQLTGA