Scaffold Ga0211729_11092537

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_11092537
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30252
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F018719	Metagenome	233	Y
F072119	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1109253710	F004450	AGGAG	MLNWIAAALIALVMSAAYLLDGPSEHEARIDTAEERIQKLCGENAGWKLLADGSIQCYTHRGFKTRKVTL
Ga0211729_1109253727	F072119	AGGA	MKFKLDVARDVDTDEPGVFIMNLPGGWKFNHDLFDLCHTYAYDSMKELRADLKHSVEPCDCAECRRMIAAK
Ga0211729_110925373	F018719	N/A	MTPTFSTWDRATLDKFALEAYLRLQEQQDQLEQLRCDLKDAIEAYRTLIKEPRRSGVKD
Ga0211729_110925379	F011669	AGG	MNDDDDYGLANLMYAIATCILVLFALVGIAGLAGFVWGML