Scaffold Ga0211729_10991997

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10991997
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24174
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035747	Metagenome	171	Y
F038652	Metagenome	165	Y
F054011	Metagenome	140	Y
F091963	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1099199714	F091963	N/A	MLNHIPYDLYTLDWHSLAYHSLARFKQIVQRDNMLPADVCEQIEDNIIPALEYLEGWEPTDDMIQAHIDSHGMI
Ga0211729_109919977	F038652	N/A	MTHTIDTVAARELEVYAVNFSSVHYNDVGKTLSKFYKQGTFNLDRAVAYIERYLLVPAAKDYKLCYGSMSTAWNQMFPKPERFMAAESIAHAFVSEFRLGNFWD
Ga0211729_109919978	F054011	GGA	MYNHIRDFHKDQLLHTLNNYMSQEMRRHLMRECPAAYNALCGRIVITSHVEDTGDKVIQRPVDVDLKDFD
Ga0211729_109919979	F035747	N/A	MAITNYNADRDFMRRMIRAYEQDLLQLISETPDHPGGDWAKHDLTQLEYLRTKTFSDTEQTITF