Scaffold Ga0211729_10985169

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10985169
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8982
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F051888	Metagenome / Metatranscriptome	143	Y
F056557	Metagenome	137	Y
F067677	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1098516910	F051888	N/A	MTSFALSSSTQSFSCSHENPATQLDTREEYCAECRLLQEGSSVEYALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEYLEGVYDITNRLPSWLYLGKHVFPMFKQDELNAYLALPSTDTICIVCHLQVNRFVGCQQCITPSQSLYNEIRRVMLL
Ga0211729_1098516912	F056557	GAGG	MYLDTGTMIGIMIALAASMLTMGYSIYIIKTQNQIIQRMSDATATRRKMER
Ga0211729_1098516913	F010232	AGG	MRTREELLKIKEAFAYAMLDLLDVYDELLATGRVYVADEPTVNDLTKNQEESNA
Ga0211729_1098516914	F010612	AGGAG	MLEEDTPQWEHTVWILAKVRCRTTHVDIYTAGNEALDDPSEWHVLEFDKGVKHSQEIVRV
Ga0211729_109851699	F067677	AGGAG	MNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTNDADHMEFIRKNLVGSDDCVVNIRGYMETKAGKKAGTWYDNLVITELTLA