Scaffold Ga0211729_10701951

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10701951
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23939
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (78.57%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015204	Metagenome / Metatranscriptome	256	Y
F017592	Metagenome	239	Y
F027494	Metagenome	194	Y
F033010	Metagenome / Metatranscriptome	178	Y
F038210	Metagenome / Metatranscriptome	166	N
F044356	Metagenome	154	Y
F046910	Metagenome / Metatranscriptome	150	Y
F054562	Metagenome	139	Y
F078264	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1070195111	F078264	AGGAG	MAMPLKIRETVVPAYPEPYARQSVRVVAARKRGRPRKNGRPKKSIYEKTRASPSKREGQRYMSVSMPEEAYFMLKEVATFYEVGMGNYMYSLILPAFHHAYEESLTLQRIAANKEKAKQKAPDEIPNRDGVPRRTHF
Ga0211729_1070195112	F027494	N/A	MKYLTEMAFPVELTFEVLPAMQVEDTELPALLDITKVLLTVKGPSGKPRQVDITKTLTEEQIMLLEDEIMENYSENPAL
Ga0211729_1070195122	F015204	AGGGGG	MIFEEWWDQLTKAEHKRIGASNARFVWEECQKYTLMTIEDACKAQVAYDQGMRDGRERFEVHIAGWTLTPGVQPGMIWIKDAGGEGGDFHIHELAEVIGKFYAARF
Ga0211729_1070195125	F017592	AGGAGG	MDDGDYTELDEFMYRVTIVIIFLMTIVFLAGVAGFIWAFI
Ga0211729_1070195128	F044356	AGGAG	MTEYFYPNYPRLYRIGGEYAPGLARLFGAHECQEGKAHEIKDGQCTQCGVHVLNKERT
Ga0211729_1070195129	F046910	AGGAG	MKQGFELGPDEREEAASLQEVMTALGSRTMVQVVILTAGGQKYALIGPVIQDPRVEGFNEVTEIEFGDLIPMEIAGKMLSGEHKRWLGTQLQ
Ga0211729_1070195131	F038210	N/A	MNESNLVEYVTERLNLNGEGLVFVLPVDLLYTVCMNIEKNIPMPDGAESRTSYPFIRMAVGDSFLILDATWIKNLRSAAYMHARRHPGVRFTCRRYGEGWRLWRVA
Ga0211729_1070195133	F033010	N/A	MVELKVVKRGRKVNLSPHQVAFQIKHADLRCPTYILVQHQPAGTAHASKSELLLYAGEQAIDLVNFGIDTPAMARWPWTGISWAELRKFLVAA
Ga0211729_1070195141	F054562	N/A	MNPGRSRMVQVMHLDRVGLVRVSLSEELAEYRVLATGSTGESVAEYFTDDRTDALGTADAMLAELANRAGWPWP