Scaffold Ga0211729_10610036

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10610036
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12514
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (86.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F001531	Metagenome / Metatranscriptome	676	Y
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F050167	Metagenome / Metatranscriptome	145	N
F052382	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1061003616	F001531	GGA	MDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQKWKAKSIGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE
Ga0211729_1061003620	F008808	AGAAGG	MDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAIKDIVEEMIIESQMMEIDNELKQLLEEGK
Ga0211729_1061003623	F052382	N/A	MSSYGKRKGATFETSVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0211729_1061003624	F009064	GAG	MIIQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE
Ga0211729_1061003629	F000368	AGGAG	MNPQLKQVVLSWFRAAAAAAVALYVSGITDPKQLGAAALAGLAGPVLKWLDPSATEFGRGSN
Ga0211729_106100369	F050167	AGG	MTTTTARVYEDYLASISMTLADLADELATVQLDVESVNGYEPRGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP