NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10610036

Scaffold Ga0211729_10610036


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10610036 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12514
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F001531Metagenome / Metatranscriptome676Y
F008808Metagenome327Y
F009064Metagenome / Metatranscriptome323Y
F050167Metagenome / Metatranscriptome145N
F052382Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1061003616F001531GGAMDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQKWKAKSIGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE
Ga0211729_1061003620F008808AGAAGGMDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAIKDIVEEMIIESQMMEIDNELKQLLEEGK
Ga0211729_1061003623F052382N/AMSSYGKRKGATFETSVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0211729_1061003624F009064GAGMIIQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE
Ga0211729_1061003629F000368AGGAGMNPQLKQVVLSWFRAAAAAAVALYVSGITDPKQLGAAALAGLAGPVLKWLDPSATEFGRGSN
Ga0211729_106100369F050167AGGMTTTTARVYEDYLASISMTLADLADELATVQLDVESVNGYEPRGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP

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