Basic Information | |
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Taxon OID | 3300020172 Open in IMG/M |
Scaffold ID | Ga0211729_10610036 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12514 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000368 | Metagenome / Metatranscriptome | 1223 | Y |
F001531 | Metagenome / Metatranscriptome | 676 | Y |
F008808 | Metagenome | 327 | Y |
F009064 | Metagenome / Metatranscriptome | 323 | Y |
F050167 | Metagenome / Metatranscriptome | 145 | N |
F052382 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211729_1061003616 | F001531 | GGA | MDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQKWKAKSIGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE |
Ga0211729_1061003620 | F008808 | AGAAGG | MDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAIKDIVEEMIIESQMMEIDNELKQLLEEGK |
Ga0211729_1061003623 | F052382 | N/A | MSSYGKRKGATFETSVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK |
Ga0211729_1061003624 | F009064 | GAG | MIIQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEVEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE |
Ga0211729_1061003629 | F000368 | AGGAG | MNPQLKQVVLSWFRAAAAAAVALYVSGITDPKQLGAAALAGLAGPVLKWLDPSATEFGRGSN |
Ga0211729_106100369 | F050167 | AGG | MTTTTARVYEDYLASISMTLADLADELATVQLDVESVNGYEPRGTILKALPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP |
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