Scaffold Ga0211729_10424039

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10424039
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9492
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1042403910	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLPSGTKCNYIPENKPDYVFNIDYYNKWTNFNTALLDKIRDYQKYNL
Ga0211729_1042403913	F000716	N/A	MYIMEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLNAMTEKEIATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDESIINTLNFKDLNINKSDIITIFMSEGILPKNFLSLEGPQVSMIQLPRLKNE
Ga0211729_104240395	F076869	N/A	MITQFMITEITKLVTSAQKQNVYLTQEYIDALYELDIQTIVMLKESYNAEKLVSA