Scaffold Ga0211729_10358177

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10358177
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6962
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N
F030061	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1035817710	F001805	GAG	MATTNKIFVGIDDQVIELTGEDKEAFIADRQATADAQALLETEYKAKQKAREDAIKKLAEIAGLTEEEINAIL
Ga0211729_1035817711	F028786	AGAAG	MRSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPN
Ga0211729_103581773	F030061	AGTAGG	MALSTLRASLKSAITDNTKYSAYDHVPEIIIPPCALILASDPYLEPIVIGNTKNWYVRLTLEVVSTTYSNPSALTNLEDDIETILALIPTNWVILSVSSPRIRQTNNTDLLCSEIQLQTAYTG
Ga0211729_103581774	F008811	AGGA	MATTILSGRQLTLSVNGNSYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGATPNSLYKVLWDGTESAPDTTIAFIMTLRTGVTLTGLVLPQYPSVTATGADVQTCSVSLQVVGIPTEDLTA
Ga0211729_103581775	F008616	AGG	MLKLKLTWELETGEKFEEWTRPIELSLAEKELYASKSIVKILIDESTPSNTLLLFLAHKIQQRVTKKVENFETWKSKVTDIAASDFETANFTKPEVSGEQQ
Ga0211729_103581776	F012447	GAG	MAKTVQLVKVDKDYRGLLRAFSKMDDIAKNDMKQIASALAERGANYAKGAASNAPYNVRQAQAVADSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYEKIRDAWVAGL
Ga0211729_103581778	F023328	N/A	MTVYTPTYRVTIAGVVQTSTTLQDGTITYGRNDFFEATQPSYCNIELLNLDGTSPVVELLDTVLIEVTDSTGAYIKLFTGEVSGVYNRFEGAGLSGKPNTLQIQAIGALGLLVKRYAGGVAYPEELDGARIQRILEETLFVAWEDLSNTQTWNDFTTETWANYGVQGIDTIDAGRYEMLARSAQVQQAYELTDITQQSGLGYLYDTADFEIGYADAERRSENYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINTYGLLEEIRSTILAETADATEQATNFVNYRGTPKASLEEITVNLAHSDMTNTVRDNLLGVSMDTLLYLDNVPVGLLPEGYFEGFVEGWTWTLGRKNLELAMSVSNSIYSTLDVQWEDYNSAIQWQNLDNATRWLDVI