Scaffold Ga0211729_10252871

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10252871
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2590
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013413	Metagenome	271	N
F014620	Metagenome	261	N
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_102528715	F055728	GGCGG	MRRGYDPAWGSREQLRAQSEHGMKVARERDALKKENAELLEQITELKAMIAYITEGK
Ga0211729_102528716	F014620	N/A	MFAPSIGLGGTFERPAINREIVVIAREAKQTSVDAALKAKPKTGKKRQRVHAYLLGRPATDEEIEIALNMSGNTVRPTRGTLVKDGHVIDSGLRRLTRAGNEAIVWRCV
Ga0211729_102528717	F013413	N/A	EHQETLRRMQEFRLIGEQISKIPETPKHVLEIEVRYLMGIISELEARVKELESEARRLEMLLTRAN