Scaffold Ga0211729_10183390

Overview

Basic Information

• Taxon OID: 3300020172
• Scaffold ID: Ga0211729_10183390
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1758
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008607	Metagenome	330	Y
F019308	Metagenome	230	N
F036203	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_101833901	F036203	GAG	MAETQQPMSSNDAGNVTGSSSKVQRVRGVSDAQGVNPKINQDDFFKDLDALVGFDREQAGCSIGRLVAKLDEPLRSKLNEIMRNEKVNSARLGEVMLAYGLQVSSNDVLRRHRRRLIGKDGCKCPNES
Ga0211729_101833903	F019308	GGA	MAKSSFTLDLFGDKELVNALQAGAEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALFVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIQKGHRG
Ga0211729_101833904	F008607	AGTAGG	MASAIYSKVADFMTDSVVFTAKTSVDKYNKPTFSGDTTVTGRLIYDTTKSKDVQGIEVVDIGRFITYGPATSITVGHKMVVGADTFTINAVDNIADENGAHHTVIRFGR