Basic Information | |
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Taxon OID | 3300020172 Open in IMG/M |
Scaffold ID | Ga0211729_10124461 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2452 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006019 | Metagenome / Metatranscriptome | 383 | Y |
F007581 | Metagenome | 348 | Y |
F009394 | Metagenome / Metatranscriptome | 318 | Y |
F081079 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211729_101244613 | F009394 | AGGA | MVKTDVESRLTTHEEVCALRYEQINARLKRLEQILLGTAGFVIVFLLTNITK |
Ga0211729_101244614 | F006019 | N/A | MTNWIDENTIANLYVALSEMSIFNEYKLPPASKVDFVIVHDDTICGQYEPPEQGEPHVITISTARHSHLYPVLMTLCHEIIHMAVYTASPKTDDYASHKGLFLKLQKRVAKMYGFDPKEL |
Ga0211729_101244615 | F081079 | AGGA | MNIEEFLKQFVGQTNTQPNVTSLGNENLNVNAYTRPTLGGSINAYENTPVGLLSGTIGKEGTNPIYKDVALTNQNFRGGILSQPGDVAPYGEYRDGNVMARVMGGNYPNASAQYTTPLAGGQFTGGANYSKDGLGVNAEYAKQMNDWLLKATANATPYEKQLLFGLGRQF |
Ga0211729_101244616 | F007581 | AGG | MNMEKITNMLFPVIVSAIAWLLTSMSSIQADLITIKSKMPILITEQGVIIDSPQSAEARTKMREEIKSEIAELHIRVRLLEEHEKTKGYK |
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