Scaffold Ga0180732_1005272

Overview

Basic Information

• Taxon OID: 3300020171
• Scaffold ID: Ga0180732_1005272
• Source Dataset Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5817
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Finland: Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2413
  • Long. (^o): 21.4947
  • Depth (m): 420

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031033	Metagenome	183	Y
F034110	Metagenome	175	Y
F053984	Metagenome / Metatranscriptome	140	N
F057210	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_10052721	F034110	N/A	RTTEQLNQQGGQLLMQCYEQENGTNCYGHIPRRSASPDYLRAKRKALQIAKKYKDTPLYLHLKSNL
Ga0180732_100527211	F031033	N/A	MKKNYHISLTEEELTNLRDTCPNDFMNLIIKNEWMKGIYTNDLEQNARLLIVRFFFNKRKPAPSSQVIADKKGQTKLL
Ga0180732_10052722	F057210	N/A	MENTDQQINHIMTAISEIVLNAENRENLTKMDKLTQDSAKIMVKELHLCILRHTYRVDNIRHNYDTLEDLL
Ga0180732_10052728	F053984	N/A	MENQITNTENAAVSVANEITNFAELVSKSTTLDKLDQVLTLTAEYIELEKPAESFRGVYIGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAGINVGTPVEITYLRKEGNTKIYQVTLLG