Scaffold Ga0180732_1001185

Overview

Basic Information

• Taxon OID: 3300020171
• Scaffold ID: Ga0180732_1001185
• Source Dataset Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17080
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Finland: Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2413
  • Long. (^o): 21.4947
  • Depth (m): 420

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046735	Metagenome / Metatranscriptome	151	Y
F056958	Metagenome / Metatranscriptome	137	Y
F068209	Metagenome	125	Y
F079599	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_100118515	F079599	GGA	MGFETLKNIIDFNKEQTELHPIDEDLENNLCPYDDWPLNENSEGYKSCLICGRIWRI
Ga0180732_100118517	F046735	AGGAG	MLLNVFERLLLRNIVPQIQGWNYAHMKEARELMEGLFTEQEETDLQFEQEGTQVKWKIKKEDGSDIPQERDIPVSDGLKAKIGKFLRQLDKEERLGMEHMTLYEKIVEPAP
Ga0180732_10011854	F056958	AGGAG	MENEVNILVEEKPKSIKLADGKEYKLPPIDMTTLANIEKTMGFGLGRLQTKLENETMTTMRSLIYALLKEEQPNLDIDKVGHLITLKEMSSISSTISEIMALS
Ga0180732_10011855	F068209	AGGTGG	VNTEAICYLLRKTSLTRSEIGKLKPDQLNAIIKEVYFQESVDEYRKMHSVASILAAIYNTIPQKPGHKALTAKDFLSGEPPTREGKRPDTNVEILAKQKGIILPSK