Scaffold Ga0180732_1000596

Overview

Basic Information

• Taxon OID: 3300020171
• Scaffold ID: Ga0180732_1000596
• Source Dataset Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28859
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Finland: Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2413
  • Long. (^o): 21.4947
  • Depth (m): 420

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_100059618	F064378	GGAGG	MSVTATNINTGGAVVKIGGRVNASANADGFYDMDILGTDVGCTTGGVTVTYTIETSDIFCDQVTPPVNVAVTGETATVEFSMLESTAQNLDLVTGGGSVSKDATSAYYVGFGGVPGAAFEPLELVITDNDTGYLTTWTFFRCHPGGITANFERENPTAFGVTFTAYAETSHASGKQLFQVKQAKS
Ga0180732_100059620	F053745	AGGAG	MATQVQVTHDPEGSILKKPSYLIELENKWVRWTGIEDKEAFEAIKDLSGDLYSEIRKLEAQLCKEIENRNLPEDFKEFTKARIRDTWRDIIGHQKIGLDKLCIVIRTHIPVKKEK