Scaffold Ga0180732_1000243

Overview

Basic Information

• Taxon OID: 3300020171
• Scaffold ID: Ga0180732_1000243
• Source Dataset Name: Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52148
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (98.51%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location

• Location Name: Finland: Olkiluoto Island
• Coordinates
  • Lat. (^o): 61.2413
  • Long. (^o): 21.4947
  • Depth (m): 420

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034978	Metagenome	173	Y
F039402	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180732_10002435	F034978	AGG	MEQVQIRATVDQLEEFKESILWADITEELSAWKEGFNREMMAIVDDAEGKNPSTASVLLHMGDLNGRQKAVDYFLSLPDVFLDLLKTRLEEKKDGRNKTD
Ga0180732_100024350	F039402	AGGAG	MSLVDYSSMEKEIAEAPEPTIITKGTEVKARIIGVNSGVSEKNFATWYMPRFDVPAEPNSKEFNAFFWDLADLSKLEPKQAAGALRDFKNFAACFGLDYSKPFDWEDSLFGLEGWIIVGVGKDTGFGIQNNVSKYLNRGGATTAQSTEGAPF