Scaffold Ga0179594_10249909

Overview

Basic Information

• Taxon OID: 3300020170
• Scaffold ID: Ga0179594_10249909
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 669
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F018046	Metagenome / Metatranscriptome	237	N
F051385	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179594_102499091	F051385	GAGG	MFSKNWLRIASGVGLLIACASVVGQSMLRSEWGNQLYYGTTIIAVFGYLFLTSRTKEEERDSPWWW
Ga0179594_102499092	F000739	GGAG	MMTRIELWLKGMLAAAISGAAGGVLTGFAAVGIDPQYFNLQSGMGATFRIGVAAALINAVIGVAAYLQKSPLPSGD
Ga0179594_102499093	F018046	GGAG	MPVVGSSAYNTAGQITSLVRALLNDAQGNLFTDAVL