Scaffold Ga0179594_10010817

Overview

Basic Information

• Taxon OID: 3300020170
• Scaffold ID: Ga0179594_10010817
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2538
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → unclassified Thiotrichales → Thiotrichales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026233	Metagenome / Metatranscriptome	198	Y
F032054	Metagenome / Metatranscriptome	181	Y
F053480	Metagenome / Metatranscriptome	141	Y
F102675	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179594_100108173	F102675	AGGAG	MRYERQQMIRKELERIPRGLKGSPQNQVRQIVTSQYQHGKSFDESVEIAVNFVRERYPNFMPKILPPPPQN
Ga0179594_100108174	F026233	N/A	MQTADGEIIFPVDRNLTLTADQILELLERGELDAEGVRRSVEAQVATPMRRRTASS
Ga0179594_100108176	F032054	GGGGG	MRTRYDILKKDRKGTFQWLETANDIETAKARVLQLSSESPDEFVVFRETDLQVVATSPAMQTDTEVLREFPRQRLQSFAD
Ga0179594_100108177	F053480	GGAG	MNGAHHRRPNNRHFDGRIEKRLPTSIPVYLASLEGPRASERTRTENVSPHGARVISKWSWQFGEESIITPLTG