Scaffold Ga0179594_10000383

Overview

Basic Information

• Taxon OID: 3300020170
• Scaffold ID: Ga0179594_10000383
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10806
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002588	Metagenome / Metatranscriptome	546	Y
F002603	Metagenome / Metatranscriptome	544	Y
F005677	Metagenome / Metatranscriptome	393	Y
F009929	Metagenome / Metatranscriptome	311	Y
F035461	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179594_1000038311	F035461	GGAGG	MAKILDCGKNKITEPVPVHGFGMGPTKAKAKSVAMDMAHGFANAVAAARAAKLQCPTEECPKMIGPQVANEKTTELVTVKLQANLYLSVVKRSFDIVIFCQ
Ga0179594_1000038312	F002588	N/A	MQSFLTYFSERCKWASKGTGAVCGWVSLIVGVTLAVLIWFSPRWFHDHVSDRMSAFVLGMVPLLAGATVFLIRWFVSPYPIYMQVRRELDALTDTKKEERAKAVQGCFERSASILKQHHSVLLSFHALSRAEGHRLESNQEVAEVCDLIEEAGYDHPFEGISPAYVPEKDWLPFLKYVRHAPNINPEEGKDYLDAADRWRQDHGYPLPPDDADFVSLVERTVLR
Ga0179594_100003832	F005677	AGG	MNRCLAGFLICSMLVVSGVRASDNWVQLNNTHGWSITYPASWEAYVMQAPDSGPELSIRESENVNFDGPKDCYERKARCGHFQIYSASTTPQAEVKKYVDEEMQNQKIISKEAGQLDGMPAYFIRLPEDQRLVIVKSKSLIFHISYGPNDHKPTDKTLEEIFDRMMSSLKFNK
Ga0179594_100003835	F009929	AGG	MKFFCFTGAHRPAVFSSIDMKTIILILAAIATMSFGMCLDAEGQRLPLLEGQADSRTPLPVQFRVSVEKGIITLTDVNSGKVMGRTTFERWGVVTPTQDKLRHVALDVTAAVVAGNGSRERIVNPLHKVYTVTDHKKGKAAYVTMTLEHDVAFVLSSDTQTNGRYEALIENRP
Ga0179594_100003836	F002603	AGGAG	MTAIAVRFPDESVELENVEERRVLTALEVIYEGGWLHGKTVDFPTRDLERVVVGLHLRNWHFFETYKRTICVDIHSQRTIFRHAGTFKPNNSSWWERLLAVLRIHKLKAIEI