Scaffold Ga0179594

Basic Information
Taxon OID	3300020170 Open in IMG/M
Scaffold ID	Ga0179594_10000097 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020170 Open in IMG/M

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29985
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (84.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29985

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (84.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F013685	Metagenome	269	Y
F035446	Metagenome	172	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0179594_1000009715	F013685	AGGAG	MKCVIKHLLLGLLIGSILSPVTAQAQFTVFDPAQYTLQIERQIEEANRWLERINQYTNEINKLAEQLSTMKGVLGQAEKLVLHNDALTRTMAQIGQTVRDVFALKRAMETMVISRLNMIKSIKTRLMSGIFDPEADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQVAEARQAGAAQEMKQAKEELDAELAKPQTEQCAHCISDLKLEISTCEKMIADLDAQITSLSTQIEDRVKQYNLTMEERVRIANRVKATDEAWNNLNIVKDGIFDAIQRGGVPTPSPQ
Ga0179594_1000009717	F009773	GGAGG	MRLRPVRPNIYLPVVRFGVADSDWFTVLLLSCAGYLAPVPFGITVLYVPLQMWTWLLATAGSIAFFNYVRIGRRPCWLRHKMKAVILHHRQYRAIPNGKKRGFRRSWLIDPEADNSLRQADRSRSAQTVTPTLLVVEHNRRLQEACEEKWNALLLTTN
Ga0179594_1000009718	F002416	AGGAG	MNNMIEVPAFPGLENSRAVRIGHRLVALALGIKTLNGVVAAVLVVILGVASVSAQTPSGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIVTSGLKESLSTWKFITGAACFAFGGVCAAIYAFSQGETVPLDNTF
Ga0179594_1000009724	F035446	GAG	MNIRERGSIWPVISVAAGAFFVLVVMPLIMQRQRSGRMATVDPTVTIGDVANNAAAVQNAPAYRWPDSEVPRTAERLRDVTAVAIAATTNVVEGAMTGHAPRDAAAIVVSIAQRQLIPTEWLTNQPGVLQMPHATVHLRYSPKAFAVEVISVPNDRGDGPAILIRIPDSENTTVGTRYFESTRLDGITYPNPFAPIAEIIAAGWQPRLFKQTQIPDEQRAQLEQWAKTITPK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0179594_10000097

Overview

Ecosystem & Geography

Associated Families

Sequences