NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1131266

Scaffold Ga0206127_1131266


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1131266 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013249Metagenome / Metatranscriptome273Y
F054843Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_11312661F054843N/AMPDPLNNLKQSLDQLLQADTSIKRKNKKIYDQKKELFINLINQFETSITRSYLMEKDFKIDLSKYEENFYQ
Ga0206127_11312662F013249N/AMGKRKLLNLKVIGHSPKLLNEFINDNKSNIFKETFSGIKHAIRQNKDTAEICSVNTDIAIATIAKKDWENALSSSLGYFESMDQYEMCGDINYTLKLLRNARSTKQPKTISGSAVTS

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