Scaffold Ga0206127_1117572

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1117572
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1085
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F051922	Metagenome / Metatranscriptome	143	N
F104988	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_11175721	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPADATTML
Ga0206127_11175722	F014147	N/A	MTTIKNTFERQLHEKFGVKVLSTMGTDSRIVADGTNGTDHLSYYDNDPTFIFGVSPELQAFIDAHGWECEWENSEVLNLYPGHDWTSDFSEAQLVSHWNAMCDYITAPQDHIYANDDEAFEMLQLTIRQTVAASKHDRYNFDDKWLTLDGYGNPMSFNNLLNYLDVPELEEYLIAHALI
Ga0206127_11175723	F104988	N/A	MTPKEIIENRIGRMFHEVIDPDFAFIDECETIADYMEEHLYDTIAWQIPYGVDMPEDDEDYANEVHATAMNQVIAIMASRFFYKTNTNSER