NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1024465

Scaffold Ga0206127_1024465


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1024465 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3677
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026712Metagenome / Metatranscriptome197Y
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0206127_10244652F035552GAGMSIKDDLLISADINNLYWVIGELAKKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKILSQVMNEKMDEDVNNEF
Ga0206127_10244653F077286GAGMSKYKYTVEWDGDVANYKQDFETIEEARIAMIMHHKRNAVIRVIKIDEY
Ga0206127_10244654F031255AGAAGMIKYFNEVVSELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTGNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE
Ga0206127_10244657F026712AGAAGMKQTFYPTESEQQFLMDIVINEFANRQTPMDNYNVQEVAYRQAISDGAMRTDNYFNK

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