Scaffold Ga0206127_1024465

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1024465
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3677
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_10244652	F035552	GAG	MSIKDDLLISADINNLYWVIGELAKKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKILSQVMNEKMDEDVNNEF
Ga0206127_10244653	F077286	GAG	MSKYKYTVEWDGDVANYKQDFETIEEARIAMIMHHKRNAVIRVIKIDEY
Ga0206127_10244654	F031255	AGAAG	MIKYFNEVVSELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTGNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE
Ga0206127_10244657	F026712	AGAAG	MKQTFYPTESEQQFLMDIVINEFANRQTPMDNYNVQEVAYRQAISDGAMRTDNYFNK