Basic Information | |
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Taxon OID | 3300020169 Open in IMG/M |
Scaffold ID | Ga0206127_1024465 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3677 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F026712 | Metagenome / Metatranscriptome | 197 | Y |
F031255 | Metagenome / Metatranscriptome | 183 | N |
F035552 | Metagenome | 172 | N |
F077286 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206127_10244652 | F035552 | GAG | MSIKDDLLISADINNLYWVIGELAKKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKILSQVMNEKMDEDVNNEF |
Ga0206127_10244653 | F077286 | GAG | MSKYKYTVEWDGDVANYKQDFETIEEARIAMIMHHKRNAVIRVIKIDEY |
Ga0206127_10244654 | F031255 | AGAAG | MIKYFNEVVSELQSKGTIFGAEYRKKNGELTKINGRFGVSKFVKGTGTGNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE |
Ga0206127_10244657 | F026712 | AGAAG | MKQTFYPTESEQQFLMDIVINEFANRQTPMDNYNVQEVAYRQAISDGAMRTDNYFNK |
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