Scaffold Ga0206127_1021358

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1021358
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4070
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019811	Metagenome / Metatranscriptome	227	Y
F020519	Metagenome / Metatranscriptome	223	Y
F056427	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_10213583	F019811	GGTGG	LCLLSSIDKTGLAFIMIDNMSSFKNFARMGITHTLRVIGEPASIGGNQFQASFEESDMDVTRHVFGDEDEVTTVAVCLKSELTNAPRIGETLIRVNERKTYVITEVQDDIESYDITMRRKDG
Ga0206127_10213585	F020519	N/A	MPATSNEEVFNFEGNLEQSFYDFLLANGIELATANDPQRLGDDYVGVQVSLGGISDDEHMSEKPDGNLEYDHYDYSVEITIHTDRIENAVPGAAFSRYHRELVAKVRNLLSISRAAEGASLNDQITLYWINRLVAAETNYTAYDNSYDETVLTYEGDFSILPEAWPV
Ga0206127_10213588	F056427	N/A	MTIAQEYQAERERLELNRQLDWSSYTKEYIVAGETLTQMTVQNWFDLLAIKSPLLYSNEPTVPSIVDYVWKNCKRFTHNKWLAQWRLFWLQRRIIKTLRNKSEAAAMIHVLTEHIKESLDEFPIDASGSSMGKSNRISPTSGEASMIDELATRYSLHPDDILNMPLRKAFSLQRTIRLSTIPGYKLLEADSLRELKSKYLNQLNNGTK