Scaffold Ga0206127_1004782

Overview

Basic Information

• Taxon OID: 3300020169
• Scaffold ID: Ga0206127_1004782
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11752
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024892	Metagenome / Metatranscriptome	204	Y
F064116	Metagenome	129	Y
F097122	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206127_100478222	F064116	N/A	MKDLIDFKNAQITALQKRLFELETKVGEYETYIFELTDKDCPQEYKQIVKNELLKPE
Ga0206127_100478225	F024892	N/A	MSLRKVHKRKKESFSLHKVEYTDTYTEEMDCEGLAVLKWSMFDSPDKLGSGKYFMESEPVFILDEVFRKERLSGFILRGYVSKTYGDKIAIPSNSGHRVGKSIKFKCINKTKRLKLIRGLIQYGIERINVSNEWIYFDTDNYLKDQEFVLF
Ga0206127_10047825	F097122	N/A	MKDQLRDKILSIRPQYSTEGFSSNPLPNEVSIYYEGEDFTIDLFLDINEVLRIQILEGEDFYDLSDADVTFLCGYLSGLLEYEIQITKNYYDAERGQQDNYYYYS