NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1000916

Scaffold Ga0206127_1000916


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1000916 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33791
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025393Metagenome / Metatranscriptome202Y
F052547Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100091628F052547AGGMGIITNNKSAAQADKDFDLTFRKGHEVKVQFNCEILSGCEFKCKGCFVNKLGSNVGEFDKLNDAIDLFNNQGYRVSTINIGPTDLFGNNNIVSLLENETFRECLSKVSTIQFVTTLENINHQVIKMLNEIPKAEGFMYDCNIALQPPVDWDRMEERLELLNDFKDDLNYYFVYNMGNDDEYNSEVLAMNYLADLRFDTIIQLNPSFLRAPKSKVHKHLINKWKNYDYSDDLYPKTIVDRAQGGSLELNYTFCNNRFFWTPFVYDIVLIGTDQFRVQDESDISSWMAAKDNNFMSQIAYTEKTNSCSTCPKMMTCIDKGVQSYMEHHSITECLFPYNQTL
Ga0206127_10009165F025393GGAGMKSQYEIVAPFYQQQESNEPKLYSAEDGHRYAMFVKGNDHLINGRTYCFKDEDGNYVSSFVSQYSDIIEDNLEPGIKAGVRALHKKGYLTFTSCQGHDDSKHRYIGVLFNNKEQKETFISEVNKLKCDTYWYDNVINTVERPCHEVPWWSEGGITLHIVYDDQLYHQSSQQRRRQKPYTDLELTKFWNIQTNRNYQHYECVVLSFGYPMLEKSIWERAHKSLFYNHYKVTSAYHEFVSKAHNLPEYLA

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