Scaffold Ga0194035_1004185

Overview

Basic Information

• Taxon OID: 3300020167
• Scaffold ID: Ga0194035_1004185
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6650
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051895	Metagenome	143	Y
F066742	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_10041852	F051895	AGGAG	MFTSIDKALVAAIMGILFIVQTYTGLQLPWATPDTIATIIGLVTPVLVWAIPNKKVADR
Ga0194035_10041853	F066742	AGAAGG	MTWQEVVAVTVVLLGLGAGAFLVVQRPSFWIEFGARLGKALLPLSWRYVSKRIPPEEEAAWRQAERRGQGEEWLKKRWRRSSGR