Scaffold Ga0194035_1001225

Overview

Basic Information

• Taxon OID: 3300020167
• Scaffold ID: Ga0194035_1001225
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13728
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (40.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F015354	Metagenome / Metatranscriptome	255	Y
F029798	Metagenome / Metatranscriptome	187	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_100122514	F094803	AGGCGG	VGRKICNFLLSGGESDDQVRERSVNQGERIQALQSRRGWRTLRRMASLAGHWDEIRARYLAGEELSAIADDLGLVRMSVAARASRAGLPEIRRQMQIVCKEKKIESLESLSALVRSKLAADAIKTIERVDNYDLEGIKDESTREQILGSVAKRSALVFGWSDQSEAASISINLLGSMPDRMDNITLSSKTIEADTIE
Ga0194035_100122517	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAETWSAITLASGVPTGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSVRAQRSWETRYQNVFAKYAIKAVADSSFTQTETIPAGVNEFPWADGVSTGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0194035_10012252	F002227	N/A	MKLTIQSTQNAQVIVDLFNAIITGNEAEGATPLSIYDDDKHICSLVGKSGEQILELIIEREVGDKLQEVGHPAPSPKSL
Ga0194035_100122520	F029798	N/A	MANLSCEDALTLINEAYGASCKSPRERVLLELGLLWEASTLGGTADITADNTVIDSSSTMITADMTEFI
Ga0194035_100122523	F001272	N/A	MIKIELTTEQANALMQLVDIAIKAGGYQNAKVAVPIADIILEAAKQSEETN
Ga0194035_100122525	F015354	N/A	MNAYFASLLRHVLTAAGGFLVAKGLVSSDQAGELVGAAVTASGVAWSIYNNKKNADAAGQ