Scaffold Ga0194035_1001121

Overview

Basic Information

• Taxon OID: 3300020167
• Scaffold ID: Ga0194035_1001121
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14421
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium TMED75 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F043909	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_100112115	F043909	GGAG	MKDIIRSLSIKALKRFANGGDGQADLLMEIEELRKTLELRAVENEEHLTEVREERDHWLSLYDEIKFAAEFLMSYAKNDVPKLAEQVDWEVGKIVLPEEVGTYYFNPAIIQEPDGKILLFARRCRNKREKDEDVYVEKNDIVVFELSKDMRATKKALIQLTSQHPNEQFEDPRVIKFGDKYGINCATFVPFKSYAHQAMFLLDKQFLNVGRFDTVYGNNLSQAMVNDGHEKNWLLFVHDNTPHMVYSANPHVVVRLNGRLEKETEYSTDEFNPLWKFGEVRGGSNPILCDGLYWTFFHSSLPWINKKRRYYM
Ga0194035_10011212	F007361	GGA	MSVLFSLENDCLGIHEQGATDPNWKQSIDDYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF
Ga0194035_10011214	F005740	GAG	MKLIVQDIQSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLTLALPYVQSTKKFTSLTGVIRETTNTVSRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDTKPVTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0194035_10011216	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSGPLIFDGVGIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMGIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQTISLLTNGALGSRSVITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADQSIQFWEISKAERSDKSVASDKKKIEWLVQTRSYNFEIPFGLKRLDSGDIFIDELDGENSLDGQTNDVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEACDVNPFTYTSE