Scaffold Ga0194035_1000223

Overview

Basic Information

• Taxon OID: 3300020167
• Scaffold ID: Ga0194035_1000223
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34621
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (82.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.663
  • Long. (^o): -93.723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F035727	Metagenome	171	Y
F086807	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194035_100022313	F011282	N/A	MKKIKNIVVVTGTYTNREGVEKKRYQTIGSLFEDGENFKIKLDTIPLADGGWTGWANCYDLEEKTNKPEGKYDDTSIPF
Ga0194035_100022320	F005737	AGGA	MFDIETYKKPTDWAQVALYAVSVAAIVVVALDVLVWRASC
Ga0194035_100022324	F035727	GGAG	MNYEHRQVANSILSRLKDGEEFSQSVIRTALRDAGDLAPDRGQGLDQALQEEDQGGGQSRSLSVVASNLIRLSEKAWAESRGRLAETHE
Ga0194035_10002233	F086807	GAG	MTHRIEVNVETGVTTQVEYTAEEQVAYDAAVAAQAAEAAAVVVTPPVEPTA