Scaffold Ga0206128_1106395

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1106395
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1204
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F058911	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_11063952	F008307	AGCAG	MIKVLKTSSLEVAADFEEFFDGATVEEATKKAHDQRMPTEFAKVNIIDSKLLKANIKIVNEENDGSK
Ga0206128_11063954	F005537	AGAAGG	MSDNNIKFMNNLDKLLHEKQGDYGHFDHTSYAMVGMMEKYLTIHNNKTVKVPLKFFGLFMIFLKCWRVMQSDKYKADSFDDINGYTELLRRLVVDENKTKR
Ga0206128_11063956	F058911	N/A	KGQSKDGNTRFVKVFAQVGVIFKGDDKFTGEMNYPEAGGQKGLIGWLNDAGTILSGYKNEYKPKQPKAESKEIPF