Scaffold Ga0206128_1038686

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1038686
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2436
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F013081	Metagenome / Metatranscriptome	274	N
F019630	Metagenome / Metatranscriptome	228	N
F030048	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_103868610	F013081	GAG	MQNKNVNNMDLIKLIKTIEPEYYNRDFCINALPNEVTLISDTEQYLIEVSLKNEILETNLYQGEEIYKASDDEIDYIYNYLEQLLTDKVEETKQYYNEHNYNYQIWS
Ga0206128_10386862	F030048	AGAAG	MLQEQLCKNKEIIAYRSCVDSYFSNGDRKDIMKYWLQLFEQKRFCEAKGVEKALELIDIYEDLNVKD
Ga0206128_10386863	F019630	N/A	MSKIKKKISSNKWNYKHQQYCFKKGFIIYPVVSGKMFKIYCNRIKGNYYMKGKEFNKQESFQAIWDLYTKIYNYEINKIRD
Ga0206128_10386864	F010473	N/A	MKLIRYEIKAGFFKGLLLGIRHYTFDDVEMYEEDIVLYIGIFQIILTKIYEK