Scaffold Ga0206128_1028649

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1028649
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2997
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F007827	Metagenome	344	Y
F042015	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_10286491	F001802	N/A	MQTMKHLKKDYIQLGNLIYRPYKVCDLPQNFGCIEFNEKEGISEWFNYKGYTYIFETIAK
Ga0206128_10286492	F007611	N/A	MKKKWITVLDYETSRVYQYQVTINKHAEEYITFKGHRLSNVEWMEHQFHAVITK
Ga0206128_10286494	F007827	N/A	MKLTNKQKRSVKRQVQIDQGVKTPGTRVFVSKKIYTRKKKHKNERNR
Ga0206128_10286497	F000126	N/A	MNQRDFSITREKGEWYDVRVIDSYGKVYHNYFEKSNEANDWVYYIWEKEEWFNSVNSQELLANAIENCKRLDKNINVREI
Ga0206128_10286499	F042015	N/A	MYKNTDKVRAHREELKRLLFSVPTEGRKVVKTITVTMMTNKHWKGYGNVSIDSDGPNGFTHFGTSQKNPMEYVLNSEEYKSGEYQLIIK