Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1017536 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1017536 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4193
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4193

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F004856	Metagenome / Metatranscriptome	421	Y
F005591	Metagenome / Metatranscriptome	395	Y
F011192	Metagenome / Metatranscriptome	294	Y
F015812	Metagenome / Metatranscriptome	252	Y
F094102	Metagenome / Metatranscriptome	106	Y
F106085	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_10175361	F004856	GGAGG	MNVDSDKPKYIEARYSAYLSWDLEELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLN
Ga0206128_10175364	F011192	AGGAGG	MTAKEMTDKNFINFQDDFYNLLEKYGVGKIDIEHSQFNSICNLRNKVVEFIEQETWEQDN
Ga0206128_10175365	F015812	GGAG	MNKTLYKRLEDICAREYVVNKLSEHKFRTFVDFLYDDIRTWDKPTDVADVDVIHRIEEHLSYMVSRRLADAHIGTNHD
Ga0206128_10175366	F106085	AGG	MTNNPLERLRKKLSFLLDNLKNKFRMLIKSKQNNKIIINKDIKNNIPKHLKGLNNKQLKDLQSLFRMRI
Ga0206128_10175367	F003051	GAGG	MKVKHLKTKVSIDMSVSEYDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWNPDTYRYVKRGS
Ga0206128_10175368	F094102	GAGG	VREDCKLTPMNKEEFRMWEDYIISYNHSNPTDQIAYEVTWKDDNYKVKLLNLKVDRGVE
Ga0206128_10175369	F005591	GGAGG	MNLYFKSTTLEKEIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQGAIQFTRDRNSARRRQKRLAQKEKAC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1017536

Overview

Ecosystem & Geography

Associated Families

Sequences