NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1011768

Scaffold Ga0206128_1011768


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1011768 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5527
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070557Metagenome / Metatranscriptome123N
F077258Metagenome117N
F079926Metagenome115N
F090391Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_101176811F070557GAGGMSNEIKQNIIRDLQGDVLSGDHYTINMFSCWLDGSYLGEPHYRKNLAAITECNNNRKKLRSFVINAFTSYIAHDADCSYGYAQKVLVQFLGLDTLNKLNEQLIDNAIEFHLTNCEAA
Ga0206128_10117683F077258GAGGMPIDPRTVRQIKTAAEQGLTQAEASRLLDMNQSYIARAKALYNIKFIMHEDKYAHFRSPQDDIEINENELINDRGHEKPRPDQGQEILQVVFRRAASLDGIDGVETEKPPKNIQELKERLKQNDEKHHYEIIYSYKMQEFEKQQIKLGLRTALHKTRKIQSLSTSSVNKNIALNSQSFPAKHEIAKQQRILKSINRGGRYTTSMIARNTGLSVSYVAPQLNVLFNQGLVLRSNEKQPPFIGAIDGKKTFRYVYFKKNDE
Ga0206128_10117688F079926AGGAGMTTCKVVAQPWYDMAVQDKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFVTDYLELDDLEVI
Ga0206128_10117689F090391AGGAGMKDTVKIKREALEQLFDFVRKDLENSHLETIDNEDLEYIINITDALMAAKYSLGLYKNETNVFIELKYLEFLAQIVQDCFDFIAPDTDWNCLSDMLATNLLANALLNARQAIGIEPEIKEEQNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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