Scaffold Ga0206128_1008941

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1008941
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6700
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008696	Metagenome / Metatranscriptome	329	Y
F011743	Metagenome / Metatranscriptome	287	Y
F016507	Metagenome / Metatranscriptome	246	N
F046341	Metagenome	151	N
F079213	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100894110	F016507	AGG	MTSKNLHTKTRNRLARQDALREYMQERGSVQYLFDIIEKIEKLDPESETFSQDLAKYSKVVDVRHKMLGKYLPELKATEITGEGGGDLQITVSDFKSA
Ga0206128_10089414	F011743	GAGG	MNRLTKISIAAAVVAALLWVSNWDYDHEVTMSKEYRYNVCLGYWPDYDDLKPDCEGVR
Ga0206128_10089415	F008696	GAGG	MNNWHSETIKRFKTLGSDALLYIRQDAYNAAKAGETIDNPKVGQYWDEFHYAAQELRRRKITAVEFKRAL
Ga0206128_10089416	F046341	GAGG	MFETETYRIPHFAIVALLYDDYSGIQDDDEAFVDNLHQWLDDQHGEGQWHIGDVSEPYHGRADFERILGNICNVNIEVRI
Ga0206128_10089418	F079213	AGGAG	MTTARLYNAAKAQQVEGKKMILELSDGQRFNVKGSREANKICNELNAKPWNF