NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1004792

Scaffold Ga0206128_1004792


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1004792 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10383
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (16.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016663Metagenome / Metatranscriptome245N
F018905Metagenome / Metatranscriptome232Y
F028771Metagenome / Metatranscriptome190N
F030399Metagenome / Metatranscriptome185N
F062669Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10047922F028771N/AMSFLRGNIGESLWLNELSKTHTDIEKAPNKKFYDWDIKANYKGNEVTYEVKYDSKGYYYADRYSRPVNLYIEFQNTKKGEDSGIIASKATYYVYILKSLEGVETAYVFKRLDLLNHLRNNDVKVKGNSFGGDNNAKGWTPPLNSLEHLIVKKIKFI
Ga0206128_100479220F018905N/AMTNNYKISLTLLLKLSKTKKTFICFNVENNKIKEFVLTNDLIRFRNRYQTFKLVEIIKPKLNKLTIEI
Ga0206128_100479227F030399AGTAGMSLKKKHTTKERFKIIESAITSIYVATNKLNRKVEEIEKQLETLMPKEDGI
Ga0206128_10047925F062669GGAMAKKKKTSFNYYKTNNEAQSHCFKKGYVIYPEAFEGSWRVSIELGHRKHTYPEVLSLTEAYIKIWKEYEKIQNRDNNGKT
Ga0206128_10047926F016663GAGMAKLRTYNVEAAKQLADKFIQITGLDLTSTSRYQEQAYFRALFYKVMCDINGMNDRMISEWFEDMGVKRNRSSIFHALRKIDVYYESFVRFRNVYDLFFDDKKMERERIENKKSERVRIINERIDRKLDASDRNKIHELADVIPEERIDEMYEMMTLRMKSWAWKSKDKCEVIQSSTSMDGMCW
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