Scaffold Ga0206128_1001998

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1001998
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19005
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (94.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F004646	Metagenome / Metatranscriptome	429	Y
F016668	Metagenome / Metatranscriptome	245	Y
F038194	Metagenome / Metatranscriptome	166	Y
F067630	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100199812	F016668	AGGA	MIPIGQLRLLLTKAGLEYVITRVEGNVAHVNILVAEQPDVHS
Ga0206128_100199815	F000375	GGAGG	MTKLYDLEQMIMDCWHVCDDLQVVFKQIGDGEREPTQDELMNALLGMQQVYQWKFEQLFNKYEDVLRDRQ
Ga0206128_100199830	F004646	GGAGG	MIYAIADVPHADYDNYDTLNKLFHALSPHGWEHSSWKNDTCPSLLKEERHGNYCQVFVDYVDPAMREDPEWSLLSYNCYDAEGMMTFHEEFDNVDKLIIYLTKKVTS
Ga0206128_100199831	F067630	GAGG	MARLDIDTTTLDVAARALAKFKLDYPDRITIWVEAEEGQLDIKIGSTAKRRNEGGMRHHIYFHKTDGLMEV
Ga0206128_10019984	F038194	AGGAG	VAYEIKPGDVAIVLSPVVEDGEWTGSIKTGMVFGSAGSEDGMRAALDEALTMSAAQQFLELYPDAWEDFADLRQGIIQEMFPDQYAEAEQEQAEATAYEVEDNVVTLTRWSKTQGSA