Scaffold Ga0206128_1001129

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1001129
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28086
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016325	Metagenome / Metatranscriptome	248	Y
F048336	Metagenome / Metatranscriptome	148	Y
F105292	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100112930	F105292	N/A	MKHVRLFEQFVNEAKVDKKYFDKVVKVLSKSKYPFTIMLVSKWDEIDIVIGYDAPDDISDDIDQRLSKAKLNWGGSSGITIAGDSSNYSRREYDEIARINGGHKDY
Ga0206128_100112931	F048336	N/A	MKPVRLFEQFVNEAVSFDKKGIKAKLEDKVRIAKIAVDKWGGSYEKVLAKAEASAKSGKLPNYKEHLSVQGDSEQDSYDVFQGRNAAQLAEKISKVIKKYKKYEVEQSSVGAAAGWSGTARSTVGGSIEGKANFSNGNASFLIAVTCGGGIDRSVRDKMFQEIYELMFVLDQYNSSDGGVQFNTSEGTNYNTIGLQNSSYSFNSGMASKLENIMNN
Ga0206128_10011298	F016325	N/A	MKITINKVDQTNFINFINRLKVIDSFVYFKIKGGTIQASAYLPQRDAVKHHRLPIGQIFQIEEGSITTTKELKVAFFDAQKLTDAFKQFDYDSICGEIEFVENDEDFVATSFRIFNDELEIKLACSEPSLGYKDLTDTQISSIFNVDDASFKFDMDYGTLTKVKNLFGLDKEETFSIEANGKGVKLTGNTYNMLVTPDYEGTSGKKVTLFKKYLNLLDKEDYTANVLENRVVMKSNDSETLLTIATCNTGA