Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1000499 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1000499 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44390
Total Scaffold Genes	91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (25.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

44390

Total Scaffold Genes

91 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (25.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005287	Metagenome / Metatranscriptome	406	Y
F020156	Metagenome / Metatranscriptome	225	Y
F023615	Metagenome / Metatranscriptome	209	Y
F034890	Metagenome / Metatranscriptome	173	Y
F035765	Metagenome	171	Y
F042280	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100049931	F005287	N/A	MNINSDQIIYSEHNYDECFEYIDGSGRVPEGIAVGYEQEDHDLAGPITNLVLFEDIKYSQYDHDYWNNYELEHDVDRIVIG
Ga0206128_100049936	F035765	N/A	MVKRYNANTLFRGHSILNGLIKDLLAYFQSAIWTEEDEIKKQKIFKDIIVEGKCWYCGVEQMRDMDHFMPTNGRLFDPPMFGLEHEGNIIPSCKTCNANKSNKHPLLWLKKGRVTKGKEFFFSQNRIDAFELFFDTFKDKLIADEDLTNMIVNQAIPKCEQSTQELADFENWIEL
Ga0206128_100049945	F034890	N/A	MITIEDANNEKYYINPKQVIYVKERIHSGKLMYKIMMSNGEALMTSNEHGAKCIIASIKSRKDI
Ga0206128_100049955	F023615	N/A	MNRFELEDAMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWNAFEQLIKNGTIANKDR
Ga0206128_100049975	F020156	N/A	MQTYRQALIEELQRLVKQESFNVNYAKDIVELYDDEAEDHSNETAYDKAMQDIDNVKNGEWDL
Ga0206128_100049977	F042280	N/A	MKIKNKWDEEFEVNVGDYVGFKCDIEQCGKVKQIQSRGALIVENKNGFDGDYIGGDTEALVGFDEVWKEYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1000499

Overview

Ecosystem & Geography

Associated Families

Sequences