NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1000328

Scaffold Ga0206128_1000328


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1000328 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56230
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (72.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F009293Metagenome / Metatranscriptome320Y
F089431Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100032827F004144GGAMKWFREARHHLQVETGWGYWYHLWHSIKNSWALIKIALMSLIHGLLPWIWKADAPKGVIKMYHQIMRIKHIKEMDTLRKNPKNERYRDTTTDPTE
Ga0206128_100032830F089431N/AMPYGQPWHYIMKSSNIMKKNKGVNYYSGDKVKDLADAMVEKEVIVGETHIDSNYEDEMYSAEQMERHDKMDNIFKVDNNPSRWDHNKTRSTWHFDPFEDPNEQSFVVPCRFEGDYSEAIAYALKQAKEMTIGNYRSRNDSKQDADLHDGEILDVKRATGKDDLSSMYYDKIARTKFNKETGKKEVIENRIPEYEIFFKIIEELGVDVHQSRLHIQRLGQVTPIHIDQQMRYARPGWQKVWQDAGADKNPLMLRRFLIHLQDWEMGHVWQFGNTYHQGYKAGTVTTYDWCNMPHGTANFGYTPRVTFQITGFVSEKCQWMIDNPDPDRVIKL
Ga0206128_100032843F009293GGAGMTRIAKDTIAGKDFIVNVFDANKDDLDDNEKLYAAFESGWPVVIKNLTIPNLDYEYYDNLPDWTIKDNKWIMPWYNSHIKKRERLRTERGWTGGEIDIFHKKHKQSQAGWNEIFDRLFPRYNTTERMLSHRYNTLVENKLHLDELDEQHTGNEQQIRMFVQLDKKRPRVLSFGPDLEQMYMQYKDEFNLEELDKNDVHKFITEMRNRCVWNDQKWDQFHHPLHYITFDPGDIWFFNAQWITHQIVFGTKLQCFEADILNNSLQHPELCMVDRIRDL
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