Scaffold Ga0206128_1000193

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1000193
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74948
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F041775	Metagenome / Metatranscriptome	159	Y
F066781	Metagenome	126	Y
F072343	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100019329	F041775	N/A	MYLNDPNHLQVQDVDSLEANELVMAFIHDNMIEPMTDKNMLDNGQLSMLNVVGSALKCIAQKAHAYETLIESQDSSLYHN
Ga0206128_10001936	F072343	N/A	MHTRREIDHILDQISEIIAKNKTSNKQNDDDKAMIEHLKQTINLKTDDGKRAKGMWTDSPEFNRTNIYIK
Ga0206128_10001938	F029108	N/A	MNHNKYLVGKKKSGKGMVGHKGGLATPTGAFGGKSKFNKKRLDKKS
Ga0206128_100019395	F066781	N/A	MSDKKNNQCIVITDNGEIKGSIVSEYEEIGGPDDGAVFAVIDLDNGQTITVKMSEISE