Scaffold Ga0206128_1000032

Overview

Basic Information

• Taxon OID: 3300020166
• Scaffold ID: Ga0206128_1000032
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 172527
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (18.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F047072	Metagenome / Metatranscriptome	150	N
F078789	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_1000032170	F009463	N/A	MSNLKEYFLDENYTNPTLNEDGENQEDGSLSYKIKLGDKRYKLSFDVNKNPTKKGIKVKFFPLDDAGNEVPNPSPEQIGMLQNDVATQLAPKFNDFKLEFDEDEDAPEKNVAAFQVPLSSFVSFVANVVFKS
Ga0206128_1000032172	F012129	N/A	MRTDPLHLLKQSLDQLLQADTSIKRKNKKAFDQKRDLFIHLINQFEYAISKSYLLEKDFAIDLSKYEENFYQVIDSLVLLSFGKEIYELLSFYFYERWNPDGTQNGIIIEETDEEIMIENAEELWAIIVRIKPNIFDGKG
Ga0206128_1000032178	F078789	GAGG	MKEFLEDFKKQIIAGVGVAIATISTLFIDVVKEKLGLVDEEPVQIEQVTEQSSTPNITINIPEQKKDTVVKKVYVKPPPPKKTETEKRKDDGFDW
Ga0206128_100003280	F047072	N/A	MGLLDKITRKEQAAPSTPKISKEDLSLNAEETKILLHLIKNSNFKGDSVELVYELTKKLQSVLTVLSQN