Scaffold Ga0206125_10246603

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10246603
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F022555	Metagenome	214	Y
F081542	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_102466032	F006383	GGAGG	MRDKMWEVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLRPEEN
Ga0206125_102466033	F022555	AGGAG	MAITPKFKPGQLVKYGNPTHDLVGLVKSTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS
Ga0206125_102466034	F081542	GGAGG	MNIFAIEGDVETGQIDWVKSAQSQDNLRVVKMILE