Scaffold Ga0206125_10066666

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10066666
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1651
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F007119	Metagenome / Metatranscriptome	357	Y
F012719	Metagenome / Metatranscriptome	278	Y
F031527	Metagenome / Metatranscriptome	182	Y
F051178	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100666662	F012719	AGGA	MIGVGANSLAIYPLGPLATLAGGLCWLSVSIMWREAALITTNLVLSAITIIGLIYTYTH
Ga0206125_100666663	F007119	N/A	MIRGQVPKFQVLKDNKVLKEFDDAMDTAIFALNNEYGPGMDIYTNDKQASETWTHFKYKESL
Ga0206125_100666664	F051178	GAGG	MKKGKCTVCKKVFTVKKGESLKGKLGPIPVDLCKTHLKKVLSYDEMYLNDTRASA
Ga0206125_100666666	F031527	AGGAG	MKKQKNKMKTVYEYMTVLFAVVGTLSMVSAVGAIETDQYLLGASAVCVGVASFIMTLFSQQLYSEAK
Ga0206125_100666667	F003514	GGAGG	MVTTDQYNKLREQELILKAAKSGGAIESEILHGSLFVTFKSGSIMGYMLSKNLKYVLEKLLDNTTVKVYNTTNNEYAYDFI