Scaffold Ga0206125_10058003

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10058003
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1828
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018365	Metagenome / Metatranscriptome	235	N
F055199	Metagenome	139	N
F059332	Metagenome / Metatranscriptome	134	N
F076598	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100580032	F059332	AGG	MTTILSIIGIMCMILAVGAIDGPTLETSGNNFVLCFVLATVGIMSMFLAIKSQQYNDKED
Ga0206125_100580035	F018365	AGGA	MKLQFNNVPDILDFIKNPENKDALLLIEMAIKEARKGSFANFKVGDHVIFGRTNGRKRPGVIVKTNPARAVIKDTNLGGTWRVPYSLMEAA
Ga0206125_100580036	F076598	GGAGG	MSIDDFNDPMNQVLADNLVEVIATMTQEQRDEFVTTFVSKWPKLASQVSFNIDVNLQEIVSVN
Ga0206125_100580038	F055199	AGGA	MTPDEKFITAILTQAVEDTMYMGKRPRYLKHKVEAIDWILNKEGEHHWSFLNYCTMLGLSPSKIQNKVKGFINPKLTTTQKLIMKQN