Scaffold Ga0206125_10047194

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10047194
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2128
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010128	Metagenome / Metatranscriptome	308	Y
F015092	Metagenome / Metatranscriptome	257	Y
F027515	Metagenome / Metatranscriptome	194	Y
F057372	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100471941	F010128	N/A	MAKDTPTKPGGMRRFDELVAIRNVFGNDTVLLEEMVRNMSNRDVNQVFRRVAKSFDVTGALNRELDTINQR
Ga0206125_100471944	F057372	N/A	MNKHELTDVLLEMVEHAGVELILEELVTAMSTDELKENVKHLDQHLFENHFLTRED
Ga0206125_100471947	F027515	N/A	MRMSLEGQQMNKFYEALLLVGSLTKEQQDRFISEVKDQQRQSVINELNIGTVVKINHKKISPMDQFRITKINRKNVKCQQVGTNVTYTVTPSLLEVIK
Ga0206125_100471948	F015092	N/A	MIEKIKSKLLTKLFISWVNEEFDVELLEASKVMIQQRQDAVNTLADQAKPPRPIGFQIPTGGL