Scaffold Ga0206125_10043789

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10043789
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020188	Metagenome / Metatranscriptome	225	Y
F025298	Metagenome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100437892	F020188	AGGAG	MTDIKKYKSVAISIDTYKRAKPIAEQNYMSMASFIRYLVDKEEDKSTLKNGDDKHVRQ
Ga0206125_100437894	F025298	AGG	MKKKLIVSAVRKINDKVIVSYTDGTMKEFTVNEWLYSYGEGRRLWEQHEREFKNPENFDG