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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10036378 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2582 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008453 | Metagenome | 333 | Y |
| F019909 | Metagenome / Metatranscriptome | 227 | Y |
| F020259 | Metagenome | 225 | N |
| F026537 | Metagenome / Metatranscriptome | 197 | N |
| F068220 | Metagenome / Metatranscriptome | 125 | Y |
| F069998 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1003637810 | F020259 | N/A | ADWAERIQMMTQENRLINSQDIVHDVFGMLRDDEHFLPRL |
| Ga0206125_100363782 | F008453 | N/A | MSNYAVYRVYKDWNKRPRVLMDGLTREQAQTIVKSTPSNDNSMVVFDEEPRNKQWGRR |
| Ga0206125_100363784 | F026537 | N/A | MKKQIINRLEYVEETYAGELETWHDPVADTYYHVPIEITRRWDESEALINDKANTMTHERKEEHIRNLAFCISDGASGYVTDNFRIEDLPTPQRTGTMTQQDTYSRHKARQIFEAFLEQNPNIND |
| Ga0206125_100363786 | F068220 | N/A | MKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKAKVLALVMKDGYEEIITLSDGTQDIVVVNDDESEHEILKIIEVEPLWDTDHFNPAISRTPEWLMWNQMESEAMYNGEYLPTDMGCIKEATDALYATNESMLMEPWDNFVNDIFYQGSAMLDADDVCIHFFRIPKSDTL |
| Ga0206125_100363787 | F019909 | N/A | MKDFEQHIGHELPQAILDHLDAHSTDELYNQAQKLKFDAWCPVVMENDSPELRKELKEASELLFKYVDFQSVTK |
| Ga0206125_100363788 | F069998 | N/A | MTKKELIDLMSDYPDDALVVIEVHDTTLYEDLYDFTFDGVSWTRTFPNGTQTEMHELRLCAINHCEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |