Scaffold Ga0206125_10032699

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10032699
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2800
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F005335	Metagenome	404	Y
F007551	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1003269910	F004191	AGAAG	MSTFKEVMATFFAVFGIIAIVGTVGAVETDQYILALALFVMGTTNMFLSIICQEKQ
Ga0206125_100326992	F005335	AGTAGG	MKVIVLMIVITMYGCGIKPSVSCNVNDINTVIDDCKKQPQFGITKEF
Ga0206125_100326998	F003514	AGGAG	MTPQEYNKLRTEELILKAAKSGGASKSEMIHGSLFVTFTSGFVDVLSQNLKYVLEKLLDKTIVKVYNITNNEYAYDFI
Ga0206125_100326999	F007551	AGGAG	MIKGEEGLITAILTQSVEDAKYTGFNKHDLKHKIEAINWIMGNDPQFNYYCKVINIEPSYIQNKIKTYNDTRITSQQKVLLKPIVESMLKQNNYKETNDATRI